Parallel (MPI) jobs

Parallel jobs have to be submitted using "universe = parallel" directive from hpcm.nicadd.niu.edu. The number of cores to run is defined using "machine_count = $NPROC" command.

  • Nodes (cores) available for parallel use: pcms0-pcms6(12 cores each), phpc0-phpc2 (48 cores each)
  • cat condorParallel.cmd
##################################################            
##Condor command file example (parallel universe)
##To be submitted from  hpcm.nicadd.niu.edu.                                              
##############################                                                                 
universe         = parallel
#                                                                                            
#number of cores to use
machine_count = 12
#
getenv            = true
#
#To use any of available cores on SL7 nodes
requirements = (Arch == "SL7x64")
#Uncomment to use only cores on pcms6 node  
#requirements = (Arch == "SL7x64")&&((Machine == "pcms6"))
#                                             
#                                                                                                                                                                                         
executable                = $ENV(PWD)/condorJob1.sh                                                        
#                                                                                                          
output                    = $ENV(PWD)/condorJob1.out                                                       
error                     = $ENV(PWD)/condorJob1.err                                                       
log                       = $ENV(PWD)/condorJob1.log
#

should_transfer_files     = YES
when_to_transfer_output   = ON_EXIT
#
#Uncomment and provide a working e-mail address
#notify_user              = user@gmail.com
notification              = always
queue
#
#############################################################################


Page last modified on October 29, 2018, at 02:49 PM EST

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